Miller, C.E. D.D. Busath, B. Strongin, and J. Majewski.  "Integration of Ganglioside GT1b Receptor into DPPE and DPPC Phospholipid Monolayers: An X-ray Reflectivity and Grazing Incidence Diffraction Study."  Biophysical Journal.  95 (2008): 3278-3286. 

Moffatt, C., V. Vijayvergiya, P.F. Gao, T.A. Cross, D.J. Woodbury, and D.D. Busath.  "Proton transport through influenza A virus M2 protein reconstituted in vesicles."  Biophysical Journal.  94 (2008): 434-445. 

Hu, J., R. Fu, K. Nishimura, L. Zhang, H.-X. Zhou, D. D. Busath, V. Vijayvergiya and T.A. Cross.  "Histidines: Heart of the H+ channel from influenza A virus."  Proceedings of the National Academy of Sciences, USA.  103 (2006): 6865-6870. 

J.D. Durrant, D. Caywood, and D.D. Busath.  "Tryptophan contributions to the empirical free-energy profile in gramicidin A/M heterodimer channels."  Biophysical Journal.  91 (2006): 3230-3241. 

Boda, D., T. Varga, D. Henderson, D.D. Busath, W. Nonner, D. Gillespie, and B. Eisenberg.  "Monte Carlo simulation study of a system with a dielectric boundary: Application to ion channel selectivity."  Molecular Simulation.  30 (2004): 89-96. 

Yang, Y., D. Henderson, and D.D. Busath.  "Calcium block of sodium current in a model calcium channel: Cylindrical atomistic pore with glutamate side chains."  Molecular Simulation.  30 (2004): 77-80. 

Ramakrishnan, V. and Busath, D.D.  "Applied field nonequilibrium molecular dynamics simulations of ion exit from a beta-barrel model of the L-type calcium channel."  Biochim Biophys Acta.  1664 (2004): 1-8. 

Hughes, T., B. Strongin, F.P. Gao, Va. Vijayvergiya, D.D. Busath, and R.C. Davis.  "AFM visualization of mobile influenza A M2 molecules in planar bilayers."  Biophysical Journal.  87 (2004): 311-22. 

Vijayvergiya, V., R. Wilson, A. Chorak, P.F. Gao, T.A. Cross, and D.D. Busath.  "Proton conductance of influenza virus m2 protein in planar lipid bilayers."  Biophysical Journal.  87 (2004): 1697-1704. 

Yang, Y., M. Berrondo, D. Henderson, and D. Busath.  "The importance of water molecules in ion channel simulations."  J. Phys.: Condens. Matter.  16 (2004): S2145-S2148. 

D.D. Busath, D. Henderson, and S. SokoBowski.  "Density functional theory for an electrolyte in a cylinder: The selectivity of the calcium channel."  J. Phys.: Condens. Matter.  16 (2004): S2193-S2201. 

Duffin, R.L., Garrett, M.P., Flake, K.B., Durrant, J.D., and D. D. Busath.  "Modulation of lipid bilayer interfacial dipole potential by phloretin, RH421, and 6-ketocholestanol as probed by gramicidin channel conductance."  Langmuir.  19 (2003): 1439-1442. 

Yang, Y., D. Henderson, and D.D. Busath.  "Applied-field molecular dynamics study of a model calcium channel selectivity filter."  J. Chem. Phys.  118 (2003): 4213-4220. 

Bingham, N.C., N.E.C. Smith, T.A. Cross, and D.D. Busath.  "Molecular dynamics simulations of Trp side-chain conformational flexibility in the gramicidin A channel."  Biopolymers.  71 (2003): 593-600. 

Dezso Boda, Tibor Varga, Douglas Henderson, David D. Busath, Dirk Gillespie, Wolfgang Nonner, and Bob Eisenberg.  "Monte Carlo simulation of ion channels using different dielectric domains."  Physics of Liquid Matter: Modern Problems (PLMMP).  Sep. 2003. 

Cole, C. D., A. S. Frost, N. Thompson, M. Cotten, T. A. Cross, and D. D. Busath.  "Non-contact dipole effects on channel permeation. VI. 5F- and 6F-Trp gramicidin channel currents."  Biophys J.  83 (2002): 1974-1986. 

Ramakrishnan, V. and D. D. Busath.  "An inverting basket model for Band 3 obligate exchange."  Journal of Theoretical Biology.  215 (2002): 215-226. 

Gowen, J.A. J.C. Markham, S.E. Morrison, D.D. Busath, T.A. Cross, E.J. Mapes, and M.F. Schumaker.  "The role of Trp side chains in tuning single proton conduction through gramicidin channels."  Biophysical Journal.  83 (2002): 880-898. 

Yang, Y., D. Henderson, P. Crozier, R.L. Rowley, and D.D. Busath.  "Permeation of ions through a model biological channel: Effect of periodic boundary conditions and cell size."  Molecular Physics.  100 (2002): 3011-3019. 

Boda, D., D. Henderson, and D.D. Busath.  "Monte Carlo study of the selectivity of calcium channels: Improved geometrical model."  Molecular Physics.  100 (2002): 2361-2368. 

Boda, D., D.D. Busath, B. Eisenberg, D. Henderson, and W. Nonner.  "Monte Carlo simulations of selectivity in neuronal Na channels: Charge space competition."  Phys. Chem. Chem. Phys.  4 (2002): 5154-5160. 

Fu, F.-N., D.D. Busath, and B.R. Singh.  "Spectroscopic analysis of low pH and lipid induced structural changes in type A botulinum neurotoxin relevant to membrane channel formation and translocation."  Biophys Chem.  99 (2002): 17. 

Yang, Y., Boda, D., Henderson, D. and D. Busath.  "Computer simulation studies of the selectivity and conductance of a model calcium channel."  Journal of Computational Electronics.  1 (2002): 353-357. 

Caywood, D. and D.D. Busath.  "Oriented Gramicidin M - Gramicidin A heterodimers: Rectification decreases with increased ion concentration. In Membrane Interacting Peptides and Proteins 2002."  Heitz, ed. Research Signpost , Kerala, India.  2002: 147-153. 

Anderson, D.G., R.B. Shirts, T.A. Cross, and D.D. Busath.  "Non-contact dipole effects on channel permeation. V. Computed potentials for fluorinated gramicidin."  Biophys. J.  81 (2001): 1255-1264. 

Crozier, P.S., R.L. Rowley, N.B. Holladay, D. Henderson, and D.D. Busath.  "Molecular dynamics simulation of continuous current flow through a model biological membrane channel."  Physics Review Letters.  86 (2001): 2467-2470. 

Boda, D., D. Henderson, and D.D. Busath.  "Monte Carlo study of the effect of ion and channel size on the selectivity of a model calcium channel."  J. Physical Chemistry B.  105 (2001): 11574-11577. 

Markham, J.C., J.A. Gowen, T.A. Cross, and D.D. Busath.  "Comparison of gramicidin A and gramicidin M channel conductance dispersion properties."  Biochimica et Biophysica Acta.  1513 (2001): 185-192. 

Cole, C. D., A. S. Frost, N. Thompson, M. Cotten, T. A. Cross, and D. D. Busath.  "Non-contact dipole effects on channel permeation. VI. 5F- and 6F-Trp gramicidin channel currents."  Biophys J.  83 (2001): 1974-1986. 

Hollerbach, U., Chen, D.P., Busath, D. D., and Eisenberg, B.  "Predicting function from structure using the Poisson-Nernst-Planck equations: sodium current in the gramicidin A channel."  Langmuir.  16 (2000): 5509-5514. 

Dorigo, A.E., Anderson, D.G., and Busath, D.D.  "Noncontact dipole effects on channel permeation. II. Trp conformations and dipole potentials in gramicidin A."  Biophysical Journal.  76 (1999): 1897-1908. 

Andersen, O.S., H.J. Appell, E.Bamberg, D.D. Busath, R.E. Koeppe II, F.J. Sigworth, G. Szabo, D.W. Urry, and A. Woolley.  "Gramicidin Channel Controversy -- The Structure in a Lipid Environment."  Nature Structural Biology.  6 (1999): 609-611. 

Cotten, M., C. Tian, D.D. Busath, R.B. Shirts, and T.A. Cross.  "Modulating Dipoles for Structure-Function Correlations in the Gramicidin A Channel."  Biochemistry.  38 (1999): 9185-9197. 

Phillips, L.R., C.D. Cole, R.J. Hendershot, M. Cotten, T.A. Cross, and D.D. Busath.  "Noncontact dipole effects on channel permeation. III. Anomalous proton conductance effects in gramicidin."  Biophysical Journal.  77 (1999): 2492-2501. 

Fairbanks, T.G., C.L. Andrus, and D.D. Busath.  "Lorentzian Noise in Single Gramicidin A Channel Formarmidinium Currents. In. Gramicidin and Related Ion Channel-Forming Peptides."  Novartis Foundation Symposium 225.  1999.