Rogers, D. S., C. C. Funk, J. E. Miller, and M. D. Engstrom.  "Molecular phylogenetic relationships among Crested-tailed mice (genus Habromys)."  Journal of Mammalian Evolution.  14 (2007): 37-55. 

Bradley, R. D., N. D. Durish, D. S. Rogers, J. R. Miller, M. D. Engstrom, and C. W. Kilpatrick.  "Toward a molecular phylogeny for Peromyscus: evidence from mitochondrial cytochrome-b sequences."  Journal of Mammalogy.  88.5 (2007): 1146-1159.  <website>

Hafner, J. C., J. E. Light, D. J. Hafner, M. S. Hafner, E. Reddington, D. S. Rogers and B. R. Riddle.  "Basal clades and molecular systematics of heteromyid rodents."  Journal of Mammalogy.  88.5 (2007): 1129-1145.  <website>

Duke S. Rogers, Mark C. Belk, Malinda W. Gonzalez and Brent L. Coleman.  "Patterns of habitat use by bats along a riparian corridor in northern Utah."  Southwestern Naturalist.  51.1 (2006): 52-58. 

Arellano, E., D. S. Rogers, Y F. X. Gonzléz-Cózatl.  "Sistemática molecular del género Reithrodontomys (Rodentia: Muridae)."  New Mexico Museum of Natural History and Science Bulletin.  32 (2006): 27-35. 

Anderson, R. P., M. Weksler, and D. S. Rogers.  "Evolutionary relationships among spinypocket mice (Heteromyidae: Heteromyinae) based on phylogenetic analysis of genetic and morphological data."  Journal of Mammalogy.  87 (2006): 1218-1233. 

Sanchez, I. U., A. A. Santamaria, E. Arellano, F. X. Gonzalez-Cozatl, and D. S. Rogers.  "Karyotypes of three species of harvest mice (Reithrodontomys)."  Southwestern Naturalist.  51.6 (2006): 568-572. 

Carroll, D. S., J. N. Mills, J. M. Montgomery, D. G. Bausch, P. J. Blair, J. P. Burans, V.Felices, A. Gianella, N. Iihoshi, S. T. Nichol, J. G. Olson, D. S. Rogers, M. Salazar, and T. G. Ksiazek.  "Hantavirus pulmonary syndrome in central Bolivia: relationships between reservoir hosts, habitat, and viral genotypes."  American Journal of Tropical Medicine and Hygiene.  72.1 (2005): 54-58. 

Shurtliff, Q. R., D. Pearse, and D. S. Rogers.  "Parentage analysis of the Canyon mouse (Peromyscus crinitus): evidence for multiple paternity."  Journal of Mammalogy.  86.3 (2005): 531-540. 

Arellano, E. Arellano, F. X. González-Cozatl, and D. S. Rogers.  "Molecular systematics of Middle American harvest mice Reithrodontomys (Muridae), estimated from mitochondrial Cytochrome b gene sequences."  Molecular Phylogenetics and Evolution.  37 (2005): 529-540. 

DUKE S. ROGERS and Victoria L. Vance.  "Phylogenetics of spiny pocket mice (Genus Liomys): analysis of cytochrome b based on multiple heuristic approaches."  Journal of Mammalogy.  86.6 (2005): 1085-1094. 

Arellano, E., D. S. Rogers, and F. A. Cervantes.  "Genic differentiation and phylogenetic relationships among tropical harvest mice (Subgenus Aporodon)."  Journal of Mammalogy.  84 (2003): 205-219. 

Flinders, J. T., D. S. Rogers, J. L. Weber-Alston, and H. A. Barber.  "Mammals of the Grand Staircase-Escalante National Monument: A literature and museum survey."  Monographs of the Western North American Naturalist.  1 (2002): 1-64. 

Rogers, D. S., D. J. Shurtleff, and C. L. Pritchett.  "Records of mammals from the east Tavaputs Plateau, Utah."  Western North American Naturalist.  60 (2000): 221-224. 

Sullivan, J., E. Arellano, and D. S. Rogers.  "Comparative phylogeography of Mesoamerican highland rodents: Concerted versus independent response to past climatic fluctuations."  American Naturalist.  155 (2000): 755-768. 

Sherwin, R. E., D. Stricklan, and D. S. Rogers.  "Roosting affinities of Townsends big-eared bat (Corynorhinus townsendii) in northern Utah."  Journal of Mammalogy.  81 (2000): 939-947. 

Harris, D., D. S. Rogers, and J. Sullivan.  "Phylogeography of Peromyscus furvus (Rodentia; Muridae) based on cytochrome b sequence data."  Molecular Ecology.  9 (2000): 2129-2135. 

Harris, D. J., and D. S. Rogers.  "Species limits and phylogenetic relationships among populations of Peromyscus furvus."  Journal of Mammalogy.  80 (1999): 530-544. 

Rogers, D. S., M. D. Engstrom, and E. Arellano.  "Phylogenetic relationships among Peromyscine rodents: allozyme evidence."  Contribuciones Mostozoologicas en Homenaje a Bernardo Villa.  Ed. V. Sanchez-Cordero and R. A. Medellin.  Mexico City: Instituto de Biologia e Instituto de Ecologia, Dec. 2005. 

Rogers, D. S.  "Rock pocket mouse / Chaetodipus intermedius."  The Smithsonian Book of North American Mammals.  Ed. Don E. Wilson and Susan Ruff.  Washington, D.C.: Smithsonian Institution Press, 1999. 

Rogers, D. S.  "Merriams kangaroo rat / Dipodomys merriami."  The Smithsonian Book of North American Mammals.  Ed. Don E. Wilson and Susan Ruff.  Washington, D.C.: Smithsonian Institution Press, 1999.