The College of Life Sciences

Crandall, Keith

Biology

Email: keith_crandall@byu.edu

Website: http://crandalllab.byu.edu/

401B  WIDB
Provo, UT 84602
(801) 422-3495

Professor

Curriculum Vitae

 Experience

Professional
  • Steering Committee - US Node Chair, International Barcode of Life, 2010-Present
  • Editorial Board, PLoS Currents: Tree of Life, 2010-Present
  • Editorial Board, Bioinformatics, 2007-2010
  • Scientific Advisory Board, Canadian Barcode of Life Network, 2005-2009
  • Associate Editor, Bioinformatics, 2005-2007
  • Associate Editor, Evolution, 2005-2007
  • Honorary Research Fellow, Bioinformatics Institute, University of Auckland, 2005-2006
  • Editor, Animal Conservation, 2003-2006
  • Council Member, Society of Systematic Biologists, 2003-2006
  • Executive Vice President, Society of Systematic Biologists, 2003-2006
  • Associate Editor, Molecular Biology and Evolution, 1999-2003
  • Associate Editor, Systematic Biology, 1999-2003
  • Editorial Board, Animal Conservation, 2000-2002
  • Postdoctoral Fellow, University of Texas, 1993-1996
 Memberships
  • American Association for the Advancement of Science, 1993-Present
  • International Association of Astacology, 1993-Present
  • Society for the Study of Evolution, 1993-Present
  • Society of Molecular Biology and Evolution, 1993-Present
  • Society of Systematic Biologists, 1993-Present
  • The Crustacean Society, 1993-Present
 Honors and Awards
  • Thomson Reuters : ISI Highly Cited - Ecology/Environment
  • Society of Systematic Biologists : President
  • Brigham Young University : Sponsored Research Award
  • Brigham Young University : Eliza R. Snow Fellowship
  • Allan Wilson Centre for Molecular Ecology and Evolution : Sabbatical Leave Award
  • Pharmaceutical Research Manufacturers of America Foundation : PhRMA Foundation Sabbatical Fellowship in Informatics
  • BYU : Karl G. Maeser Research Award
  • Kalamazoo College : Batts Foundation Natural History Lecturer
  • BYU : John A. Widtsoe Fellowship
  • Pharmaceutical Research Manufacturers of America : Faculty Development Award in Bioinformatics
  • BYU : Thomas L. Martin Professorship in Biology
  • BYU : Teaching & Learning with Technology Fellowship
  • National Science Foundation : CAREER Award
  • Department of Zoology : Distinguished Faculty Award
  • Fulbright Commission : Fulbright Visiting Scholar - Oxford University
  • National Institutes of Health : James A. Shannon Director's Award
  • Burroughs Wellcome : Burroughs Wellcome Fund Research Travel Award
  • Burroughts-Wellcome Trust : Burroughs-Wellcome Fund Travel Award
  • Fulbright Commission : Fulbright Visiting Scholar - Oxford University
  • International Association of Astacology : Sture Abrahamsson Memorial Lecturer
  • BYU : Brigham Young University Young Investigator Award
  • Alfred P. Sloan Foundation : Young Investigator Award in Molecular Studies of Evolution
 Courses Taught

Summer 2012
  • BIO 699R: Master's Thesis Section 001
Spring 2012
  • BIO 799R: Dissertation Section 001
Winter 2012
  • BIO 165: Introduction to Bioinformatics Section 001
  • BIO 465: Bioinformatics & Proteomics Section 001
  • BIO 494R: Mentored Research Section 001
  • BIO 559R: Adv Topics Ecology & Evolution Section 004
  • BIO 799R: Dissertation Section 009
Fall 2011
  • BIO 100: Honors Principles of Biolgy Section 008, 012
  • BIO 365: Computational Biology Section 001
  • BIO 494R: Mentored Research Section 014
  • BIO 559R: Adv Topics Ecology & Evolution Section 004
  • BIO 695R: Practicum in Biology Teaching Section 001
  • BIO 699R: Master's Thesis Section 001
  • BIO 799R: Dissertation Section 001

Selected Publications
Journal Article

Sundberg K, Clement MJ, Snell QO, Ventura DA, Whiting MF, Crandall KA. Phylogenetic Search Through Partial Tree Mixing. BMC Bioinfomatics. 2012 Aug;13(13):S8. <website>

Castro-Nallar E, Chen H, Gladman S, Moore SC, Seemann T, Powell IB, Hillier A, Crandall KA, Chandry PS. Population genomics and phylogeography of an Australian dairy factory derived lytic bacteriophage. Genome Biology and Evolution. 2012 Feb;4(2):1-12. <website>

Castro-Nallar E, Pérez-Losada M, Burton GF, Crandall KA. The evolution of HIV: Inferences using phylogenetics. Molecular Phylogenetics and Evolution. 2012 Feb;62(2):777-792. <website>

Yang C, Bracken-Grissom HD, Kim D, Crandall KA, Chan T. Phylogenetic relationships, character evolution, and taxonomic implications within the slipper lobsters (Crustacea: Decapoda: Scyllaridae). Molecular Phylogenetics and Evolution. 2011 Dec;62:237-250. <website>

Castro-Nallar E, Cortez-San Martín M, Mascayano C, Molina C, Crandall KA. Molecular phylodynamics and protein modeling of infectious salmon anemia virus (ISAV). BMC Evolutionary Biology. 2011 Dec;11:349. <website>

Bybee SM, Bracken-Grissom HD, Haynes BD, Hermansen RA, Byers RL, Clement MJ, Udall JA, Wilcox ER, Crandall KA. Targeted Amplicon Sequencing (TAS): A Scalable Next-Gen Approach to Multilocus, Multitaxa Phylogenetics. Genome Biology and Evolution. 2011 Nov;3:1312-1323.

Barber BR, Unmack PJ, Perez Losada M, Johnson JB, Crandall KA. Different processes lead to similar patterns: a test of codivergence and the role of sea level and climate changes in shaping a southern temperate freshwater assemblage. BMC Evolutionary Biology. 2011 Nov;11:343. <website>

Bybee SM, Bracken-Grissom HD, Hermansen RA, Clement MJ, Crandall KA, Felder DL. Directed next generation sequencing for phylogenetics: An example using Deacapoda (Crustacea). Zoologischer Anzeiger - A Journal of Comparitive Zoology. 2011 Oct;250(4):497-506. <website>

Tazi L, Imamichi H, Hirschfeld S, Metcalf JA, Orsega S, Perez Losada M, Posada D, Lane HC, Crandall KA. HIV-1 infected monozygotic twins: a tale of two outcomes. BMC Evolutionary Biology. 2011 Mar;11:62. <website>

Perez Losada M, Jobes DV, Sinangil F, Crandall KA, Arenas M, Posada D, Berman PW. Phylodynamics of HIV-1 from a Phase III AIDS Vaccine Trial in Bangkok, Thailand. PLoS One. 2011 Mar;6(3):doi:10.1371/journal.pone.0016902.

Crandall KA, McLaughlin PA, Lemaitre R, Boyko CB, Komai T, Osawa M, Rahayu DL. Annotated checklist of anomuran deacapod crustaceans of the world (exclusive of the Kiwaoidea and families Chirostylidae and Galatheidae of the Galatheoidea) - Preamble and scope. The Raffles Bulletin of Zoology Supplement. 2010 Oct;23:1-4. <website>

McLaughlin PA, Lemaitre R, Crandall KA. Annotated checklist of anomuran decapod crustaceans of the world (exclusive of the Kiwaoidea and families Chirostylidae and Galatheidae of the Galatheoidea) Part III - Aegloidea. The Raffles Bulletin of Zoology. 2010 Oct;23:131-137.

Sinclair EA, Madsen A, Walsh T, Nelson J, Crandall KA. Cryptic genetic divergence in the giant Tasmanian freshwater crayfish, Astacopsis gouldi (Decapoda: Parastacidae); implications for conservation. Animal Conservation. 2010 Oct. <website>

Crandall KA, Santos SG, Bond-Buckup G, Perez Losada M, Jara C, Buckup L. New records and description of a new species of Aeglidae (Crustacea, Anomura) from river basins in Southern Brazil. Nauplius. 2010 Oct;18(1):79-86.

Toon A, Perez Losada M, Schweitzer C, Feldmann R, Carlson M, Crandall KA. Gondwanan radiation of the southern hemisphere crayfish (Decapoda: Parastacidae): Evidence from fossils and molecules. Journal of Biogeography. 2010 Oct;37(12):2275-2290. <website>

Bond-Buckup G, Jara CG, Buckup L, Perez Losada M, Bueno AA, Crandall KA, Santos S. New species and new records of endemic freshwater crabs from the Atlantic forest in southern Brazil (Crustacea, Anomura, Aeglidae). Journal of Crustacean Biology. 2010 Jul;30(3):495-502.

Sinclair EA, Pramuk J, Bezy RL, Crandall KA, Sites JW. DNA evidence for non-hybrid origins of parthenogensis in natural populations of vertebrates. Evolution. 2010 May;64(5):1346-1357.

Hendry AP, Lohmann LG, Cracraft J, Tillier S, Haeuser C, Faith DP, Magallon S, Conti E, Zardoya R, Kogure K, et al. Evolutionary biology in biodiversity science, conservation, and policy: A call to action. Evolution. 2010 Apr;64(5):1517-1528.

Lewis-Rogers N, Crandall KA. Evolution of Picornaviridae: An examination of phylogenetic relationships and cophylogeny. Molecular Phylogenetics and Evolution. 2010 Mar;64(5):995-1005.

Perez Losada M, Jobes DV, Sinangil F, Crandall KA, Posada D, Berman PW. Phylodynamics of HIV-1 from a Phase III AIDS vaccine trial in North America. Molecular Biology and Evolution. 2010 Feb;27:417-425. <website>

Crandall KA, Bond-Buckup G, Jara CG, Buckup L, Perez Losada M, Bueno AA, Santos S. New species and new records of endemic freshwater crabs from the Atlantic forest in southern Brazil (Crustacea, Anomura, Aeglidae). Zootaxa. 2010 Jan;2343:18-30. <website>

Maxwell TJ, Bendall ML, Staples J, Jarvis T, Crandall KA. Phylogenetics applied to genotype/phenotype association and selection analyses with sequence data from ANGPTL4 in humans. International Journal of Molecular Sciences. 2010 Jan;11(1):370-385. <website>

Hickerson MJ, Carstens BC, Cavender-Bares J, Crandall KA, Graham CH, Johnson JB, Rissler L, Victoriano PF, Yoder AD. Phylogeography's past, present, and future: 10 years after Avise 2000. Molecular Phylogenetics and Evolution. 2010 Jan;54:291-301.

Tazi L, Perez Losada M, Gu W, Yang Y, Xue L, Crandall KA, Viscidi RP. Population dynamics of Neisseria gonorrhoeae in Shanghai, China: A comparative study. BMC Infectious Diseases. 2010 Jan;10(13):12. <website>

Shapskak P, Nagano I, Xin K, Bradley W, Sun NC, Stewart RV, Yoshioka M, Petito C, Goodbin K, Douyon R, et al. HIV-1 Heterogeneity and Cytokines: Neuropathogenesis. Advances in Experimental Medicine and Biology. 1995;373:225-238.

Book Chapter

Perez Losada M, Xu J, Jara CG, Crandall KA. Comparing phylogeographic patterns across the Patagonian Andes in two Aegla (Decapoda: Aeglidae) freshwater crabs. In: C. Schubart, C. Held, and S. Koenemann, editors. Phylogeography and Population Genetics in Crustacea. Cold Spring Harbor, NY: CRC Press; 2011. vol. 19 p. 291-304

Schubart CD, Rivera NT, Crandall KA, Santl T. Comparing phylogeographic structure of freshwater crabs from two Caribbean islands: Puerto Rico versus Jamaica. In: C. Schubart, C. Held, and S. Koenemann, editors. Phylogeography and Population Genetics in Crustacea. Cold Spring Harbor, NY: CRC Press; 2011. vol. 19 p. 345-381

Breinholt JW, Moler P, Crandall KA. Population structure of two crayfish with diverse physiological requirements. In: C. Schubart, C. Held, and S. Koenemann, editors. Phylogeography and Population Genetics in Crustacea. Cold Spring Harbor, NY: CRC Press; 2011. vol. 19 p. 323-343

Bracken-Grissom HD, Enders T, Jara CG, Crandall KA. Molecular diversity of two freshwater anomuran crab species in Southern Chile (Decapoda: Anomura: Aeglidae) compared to associated morphometric differences. In: C. Schubart, C. Held, and S. Koenemann, editors. Phylogeography and Population Genetics in Crustacea. Cold Spring Harbor: CRC Press; 2011. vol. 19 p. 305-322

Perez Losada M, Porter ML, Viscidi RP, Crandall KA. Multilocus sequence typing of pathogens. In: M. Tibayrenc, editor. Genetics and Evolution of Infectious Diseases. London: Elsevier; 2011. p. 503-520

GHERARDI F, SOUTY-GROSSET C, GÜNTER V, DIÉGUEZ-URIBEONDO J, Crandall KA. Infraorder Astacidea Latreille, 1802 P.P.: The Freshwater Crayfish. In: F.R. Schram and J.C. von Vaupel Klein, editors. Treatise on Zoology - Anatomy, Taxonomy, Biology - The Crustacea. Leiden: Koninklijke Brill; 2010. vol. 9A p. 269-423 <website>

Schubart CD, Weil T, Stenderup JT, Crandall KA, Santl T. Ongoing phenotypic and genotypic diversification in adaptively radiated freshwater crabs from Jamaica. In: M. Glaubrecht, editor. Evolution in Action. Berlin: Springer-Verlag; 2010. p. 323-349

CD/DVD

Nelson CR, Crandall KA, Bodily G, Allen R, Woodfield BF. Virtual Biology Laboratories. 2010.

Conference Proceedings

Clement MJ, Sundberg K, Snell QO, Ventura DA, Whiting MF, Crandall KA. Partial Tree Mixing, a Novel Approach to Phylogenetic Search. 2011th ed. 2011 Nov. <website>
Monograph

DeGrave S, Pentcheff ND, Ahyong ST, Chan TY, Crandall KA, Dworschak PC, Felder DL, Feldmann RM, Fransen CH, Goulding LY, et al. A classification of living and fossil genera of decapod crustaceans. Raffles Bulletin of Zoology. 2009 Nov;21:1-109. <website>